FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000056267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056267
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences22006952
Sequences flagged as poor quality0
Sequence length35
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA3813371.7328024344307198No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG646500.29377080478932294No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG519410.23602087194991836No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT456290.20733902632222764No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGAAG359990.16358012686172987No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCGGGAA352660.16024936120186023No Hit
GCTAAACCTAGCCCCAAACGCCTTGGCCGTACAGC340180.1545784259446742No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA246230.1118873708635344No Hit
CGCGACCTCAGATCAGACGTGGAGACCCGCCTTGG234920.10674808578670957No Hit
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCCAT227340.10330371966095078No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)