FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000056269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056269
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences11171944
Sequences flagged as poor quality0
Sequence length35
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAATGAG1321411.1827932542447401No Hit
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA867680.776659818559778No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAATTCT565990.506617290598664No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGGGGGGGGG405970.36338348992798386No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAATTTC250800.2244909211861427No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAATTTT237680.21274721749410846No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAGCAGA232530.20813745575523832No Hit
CGCCTTGGCCGTACAGCCTCCTTTTCTTTTTTTTT226360.20261469266226184No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGGAAAAAAA209030.18710262063612207No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA209010.18708471864878662No Hit
CGCGACCTCAGATCAGACGCCTTGGCCGTACAGCA176980.1584146859311146No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGAAG163720.14654566832773241No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG153660.1375409686980171No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGGGGGCCCC144240.1291091326630352No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAATTCC144050.12893906378334874No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGGGGGGG140670.12591362792366306No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGGAGGCCCC138750.12419503713946292No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG129010.11547676930711431No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAAAAAAAA127330.11397300237093921No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGGAAATTTT126090.11286307915614327No Hit
GCTAAACCTAGCCCCAAACGCCTTGGCCGTACAGC116900.10463711597551867No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGAATCTC116440.10422537026680406No Hit
CGCCTTGGCCGTACAGCAGAAGGGGAGAGGGCCCC115370.10326761394435918No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT115160.1030796430773373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)