FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000056289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056289
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences16849909
Sequences flagged as poor quality0
Sequence length35
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTTGGCCGTACAGCAGCCGATGAGAGAATGAG1390610.8252922908960517No Hit
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA1371850.8141586996107814No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTGGCCGTA1161270.6891847309086357No Hit
AGCAGCATTGTACAGGGCTATGACGCCTTGGCCGT668770.3968982859195263No Hit
CGCCTTGGCCGTACAGCAGCCGATGAGAGAACAGA575050.34127780749439063No Hit
TGGCTCAGTTCAGCAGGAACAGTCGCCTTGGCCGT516730.3066663446075584No Hit
TGGCTCAGTTCAGCAGGACACTATAAGGTTAATGC507940.3014496992238949No Hit
TAGAGGCGTGAGTGTCGTGGTCATATTCACCGGTG412240.2446541402686507No Hit
TAGAGGCGTGAGTGTCGTTTGACGCGGACAATTGT361390.21447593574540966No Hit
TCCCTGAGACCCTAACTTGTGACGCCTTGGCCGTA344050.2041850789817322No Hit
CGCCTTGGCCGTACAGCAGCCGATGAGAGAATCTC328250.19480817374147244No Hit
ACCCCATAAACACCACGCCTTGGCCGTACAGCAGC319010.1893244646009661No Hit
ATGTCAAAGTGAAGAAATTCAATGAAGCGCCTTGG311170.1846716204817486No Hit
TGGCTCAGTTCAGCAGGGACAGTCGCCTTGGCCGT297040.17628581851688338No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG239540.14216100514252036No Hit
CCCCATAAACACCACGCCTTGGCCGTACAGCAGCC238310.1414310308738166No Hit
CGCGACCTCAGATCAGACGCCTTGGCCGTACAGCA230650.13688501225733624No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTTTAATGC226900.13465948095031255No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTTG225330.13372772517643863No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTGG222310.13193543063051558No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGCCG217150.12887309955205098No Hit
CGCCTTGGCCGTACAGCAGCCGATGAGAGAACTCT214860.12751404176722853No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA173380.10289669813647064No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)