FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000056295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056295
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences26564669
Sequences flagged as poor quality0
Sequence length35
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA4588851.7274260033128965No Hit
AGGCAAGATGCTGGCATAGCTCGCCTTGGCCGTAC1022260.38481940053535013No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG915710.34470973457263854No Hit
AGCAGCATTGTACAGGGCTATGACGCCTTGGCCGT843190.31741031668792863No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTGGCCGTA761170.2865347202331036No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT693770.2611626743777609No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG670990.25258737460647446No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA649360.24444498066209672No Hit
GCTAAACCTAGCCCCAAACGCCTTGGCCGTACAGC570630.21480787131207996No Hit
ATGTCAAAGTGAAGAAATTCAATGAAGCGCCTTGG477570.17977637891893175No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGGGT351230.13221696833489624No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTTTAATGC301320.11342885544706016No Hit
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCCAT295850.11136972947037285No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)