FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000056297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056297
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences19743841
Sequences flagged as poor quality0
Sequence length35
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAATGAG3583101.8147937880982734No Hit
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA1345720.6815897676647619No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAACAGA998310.5056310978193149No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAATTCT571090.2892496956392629No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAATGAA548050.27758023375492136No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAATTCC387660.19634477404877806No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAGCAGA369150.1869696985505505No Hit
AGGCAAGATGCTGGCATAGCTCGCCTTGGCCGTAC321780.1629774064732389No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGGAAAAAAA314530.15930537528133457No Hit
AGCAGCATTGTACAGGGCTATGACGCCTTGGCCGT288810.1462785280736408No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA286920.14532126752844088No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAAACTC285400.14455140719579337No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAATTTT271520.13752136678977508No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGGGGGGG267500.13548528880474675No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTGGCCGTA259210.131286511069452No Hit
CGCCTTGGCCGTACAGCAGGGTGTGAGAGAACAGG237470.12027548236434844No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG236910.11999184961021514No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT225300.11411153483255868No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG221290.11208052171813984No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)