FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000056330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056330
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences9884448
Sequences flagged as poor quality0
Sequence length35
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA3351463.3906395177555693No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT546560.552949441385093No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAACAGA529970.5361654995807555No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAATGAG491370.49711425463516024No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG453490.45879142669373135No Hit
CGCGACCTCAGATCAGACGCCTTGGCCGTACAGCA394150.3987577252670053No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTGGCCGTA363870.3681237434806678No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA328960.332805635681426No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGGGG325590.32939623942581314No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG252860.25581600510215646No Hit
AGCAGCATTGTACAGGGCTATGACGCCTTGGCCGT193370.19563055013289565No Hit
GCTAAACCTAGCCCCAAACGCCTTGGCCGTACAGC190790.19302038920129885No Hit
AGGCAAGATGCTGGCATAGCTCGCCTTGGCCGTAC148450.15018542259517173No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAACTCT141190.14284055113649238No Hit
TAGAGGCGTGAGTGTCGTGGTCATATTCACCGGTG138640.14026074091340254No Hit
CGCGACCTCAGATCAGACGTGACGACCCGCCTTGG133140.134696444353797No Hit
GCTAAACCTAGCCCCAAACCCACTCCGCCTTGGCC131990.13353300052769765No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAACAGG122270.1236993709714493No Hit
CGCGACCTCAGATCAGACGTGGCAACCCGCCTTGG120360.12176704252984082No Hit
TGGCTCAGTTCAGCAGGACACTATAAGGTTAATGC114160.11549456277174001No Hit
GCTAAACCTAGCCCCAAACCCACTCGCCTTGGCCG111180.11247972572671736No Hit
CGCGACCTCAGATCAGACGTGACGCCTTGGCCGTA107980.1092423168193105No Hit
GCTAAACCTAGCCCCAAACCCACGCCTTGGCCGTA106640.10788665183933387No Hit
CGCGACCTCAGATCAGACGTGGAGACCCGCCTTGG101550.10273714829598982No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)