FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000056331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056331
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences18558488
Sequences flagged as poor quality0
Sequence length35
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA3068771.6535668207453107No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT650590.3505619638841268No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA586110.3158177541187623No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG509550.27456439339239275No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG420010.22631692840494336No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGGGG353760.19061897714943157No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTGGCCGTA336950.18156112717803305No Hit
AGCAGCATTGTACAGGGCTATGACGCCTTGGCCGT313130.1687260298360513No Hit
CGCGACCTCAGATCAGACGCCTTGGCCGTACAGCA312240.16824646490597725No Hit
AGGCAAGATGCTGGCATAGCTCGCCTTGGCCGTAC210660.11351140243752615No Hit
GCTAAACCTAGCCCCAAACGCCTTGGCCGTACAGC203140.10945934819690054No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)