FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000056332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000056332
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences10415770
Sequences flagged as poor quality0
Sequence length35
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGCCTTGGCCGTA1157321.1111228454545368No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAATGAG933700.8964291646224908No Hit
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTA545310.5235426665527368No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAATTCT369880.3551153683309059No Hit
ACGCGACCTCAGATCAGACGTGGCGCCTTGGCCGT271920.26106567253309165No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAATTCC266290.2556604072478559No Hit
CGCGACCTCAGATCAGACGTGGCGCCCCAATTACG233440.22412169239528137No Hit
CGCGACCTCAGATCGCCTTGGCCGTACAGCAGGGG179970.17278607342520044No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGGAAAAAAA163500.15697351227993706No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAATGAA159460.15309477839852453No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGGGGGAA151380.14533731063569952No Hit
CGCGACCTCAGATCAGACGCCTTGGCCGTACAGCA139620.13404673874327103No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCTTGG135380.1299759883330757No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAATCTC133420.1280942263510043No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGGGCCTT129360.12419629081671352No Hit
AGCAGCATTGTACAGGGCTATGACGCCTTGGCCGT125040.12004873379500508No Hit
TGGCTCAGTTCAGCAGGAACAGCGCCTTGGCCGTA122760.1178597453668812No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGAAAAGG119480.1147106742948433No Hit
CGCCTTGGCCGTACAGCAGGGGCTTAGAGGGGGGG115040.1104479073558652No Hit
CGCCTTGGCCGTACAGCAGGGGGAATCCTTTTTTT113550.10901738421643335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)