FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068567
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences18734482
Sequences flagged as poor quality0
Sequence length76
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGCG3802.936498E-510.261394569
GTCGGCG4400.00147938468.02545364
CGCGCGG14150.07.5239170
GTCGCGC4250.0092714687.515058570
CGCGCTG7258.3804734E-56.852812370
GCGACGC5300.0087598236.688388369
GGGTCGC9155.860189E-66.580940768
TCCGCGG6550.00142130146.483949767
AGACGCG6150.00525612856.33019767
TGCGCGG7509.3562406E-46.151214670
CGCCGCA7400.0054032655.75477570
GGCGCGC19703.45608E-115.75365668
CGGCGTG8050.0022128035.724595569
CCGGCGG16251.2776582E-85.678044370
GCGCGCA8150.00256268635.65435569
CGCGCGC15854.6054993E-85.586899368
GCGCGCG17208.394636E-95.55565167
GACGCGG7750.0091105265.488793469
GCGCGAG7800.0096592365.45965870
AGCGCGG10200.00115151065.218790570
Produced by FastQC (version 0.11.5)