FastQCFastQC Report
Wed 27 Apr 2022
EGAF00000068572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068572
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences17382005
Sequences flagged as poor quality0
Sequence length40
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
........................................2944951.6942521878229815No Hit
CGGCATTCCTGCTGAACCGAGATCGGAAGAGCGTCGTGTA528780.3042111655128393Illumina Single End PCR Primer 1 (100% over 21bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)