FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068661
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences16728336
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA2150.00416071711.60954969
CCGACGC5005.764337E-58.56531170
GCGCGAC4450.00153308447.99648867
GCGCGAG7201.0469557E-67.93084570
CGCGCTG6005.8108802E-57.717443568
CACGCGA4200.0079926937.64097969
AGCGCGT4200.0080711277.63263668
GGCGCGT8502.0732114E-77.551084569
GCGGACG5853.5991482E-47.31444169
CCGCGCA8401.0632997E-56.79198169
GCGCTCG5250.00755175346.79198169
GCGCGCA8953.8048693E-66.765613668
GCGCGCT5800.00268992486.7487667
CGCGCGC15301.0913936E-116.737153566
GTGCGCG7155.019431E-46.476176368
GACGCGG8407.964055E-56.35435267
CGCGGCA7902.3819604E-46.324597470
AACGCGG6850.00236960226.196168461
CGGCTAA9104.6347624E-56.1438344
GCGCGCG18707.2759576E-126.107174470
Produced by FastQC (version 0.11.5)