FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068699
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences28089313
Sequences flagged as poor quality0
Sequence length40
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
........................................433890.15446799998276925No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
..ATGAA252.029328E-434.0000041
...GTGG252.029328E-434.0000041
..TGAGT200.00279009434.01
.CTGTAT200.00279009434.01
...GGCC200.00279009434.01
.TCCCAG200.00279009434.02
..TCCCA305.909127E-428.3333361
...AGTA305.909127E-428.3333361
..GGAAT305.909127E-428.3333361
..ATTTT305.909127E-428.3333361
..AGAGG250.00830918327.21
..GAATG250.00830918327.21
..GCCTC250.00830918327.21
..GTGGA250.00830918327.22
...CAAT250.00830918327.21
...GGCT250.00830918327.21
...GCAC250.00830918327.21
..AAATT250.00830918327.21
...CTGT350.001453093524.2857131
...GGAA350.001453093524.2857131
Produced by FastQC (version 0.11.5)