FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068702
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences14960674
Sequences flagged as poor quality0
Sequence length40
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
........................................356950.23859219176890026No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTCC..200.002790052234.0000041
CCC..CT200.002790052234.00000433
....GTG400.00315741221.25000221
TAAT...504.787115E-420.42
TG.....11400.013.5701761
CTA....1154.9058486E-513.3043481
AG.....10900.012.6330281
ATA....1953.3540346E-812.2051281
.....AT1554.8755956E-612.06451620
G.T....1157.2993117E-411.8260873
CA.....10550.011.7630331
CG.....3350.011.6716421
.....GT1200.001042827611.33333420
TT.....13250.010.6490561
AGA....2252.4338442E-710.5777771
GGA....1802.5627332E-510.3888881
TA.....9550.010.3246071
TAA....2151.5507048E-610.2790711
TGG....1505.805911E-410.21
TGA....2007.320621E-610.21
Produced by FastQC (version 0.11.5)