FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068703
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences14960674
Sequences flagged as poor quality0
Sequence length40
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
........................................2527851.6896631796134316No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CC.AGTG200.002790052234.0000047
TTAG.GG200.002790052234.0000045
TT.AGAA301.4848734E-534.0000047
AATCAT.200.002790052234.0000043
TAAAA.A200.002790052234.0000044
TT.ACTT200.002790052234.0000047
TG.GAGG200.002790052234.0000047
ATT.GCT200.002790052234.0000046
AT.CAAT200.002790052234.0000047
AA.ATTA200.002790052234.0000047
AA.ATGA200.002790052234.0000047
AGC.CTT200.002790052234.0000046
ATT.CCT200.002790052234.0000046
CAGCTA.200.002790052234.0000043
GCTGGG.200.002790052234.0000043
A.AAGGA408.076859E-834.0000048
A.AAGAA200.002790052234.0000048
.ACTTCT200.002790052234.0000049
GCCATT.200.002790052234.0000043
GATT.CA200.002790052234.0000045
Produced by FastQC (version 0.11.5)