FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068788
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences16019305
Sequences flagged as poor quality0
Sequence length40
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
........................................1879381.1731969645374751No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
..A...T305.909017E-428.33333221
...T..A250.0083090827.1999998
...GAAT400.003157421721.253
.T...A.450.00624236618.8888922
...TGGT450.00624236618.888893
....AA.559.0927846E-418.5454566
GCGTCGT4200.018.21428731
..T...A702.3306215E-417.021
CGTCGTG4550.016.4395632
....A.T855.6281446E-516.07
.A....A650.002781706215.69230722
....GAA909.169325E-515.1111122
AGCGTCG4700.014.82978730
...G..T700.0045550314.5714288
....CTG950.002355179512.5263162
TGAACCG7300.012.10958913
AA.....1157.299365E-411.82608617
.....A.7050.011.5744686
..C...C1352.1923051E-411.33333421
..G...T1050.004979623511.33333321
Produced by FastQC (version 0.11.5)