FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000068790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000068790
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences19095582
Sequences flagged as poor quality0
Sequence length40
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
........................................2604251.3637971338082284No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
.TAGTCT252.0293042E-434.0000044
GG.CTGA252.0293042E-434.0000042
TT.AAAC301.4848949E-534.0000042
AAC.CTG252.0293042E-434.0000041
TGG.GTG301.4848949E-534.0000041
A.GTGTT301.4848949E-534.0000043
CC.CCCT252.0293042E-434.0000042
GG.CTCC252.0293042E-434.0000042
C.TGGTT252.0293042E-434.0000043
A.AATAG252.0293042E-434.0000043
GGA.GGT301.4848949E-534.0000041
TG.GATT351.0925341E-634.0000042
.CTGGAT252.0293042E-434.0000044
TG.GATA301.4848949E-534.0000042
GGA.GCA351.0925341E-634.0000041
A.CAGAA455.995389E-934.0000043
T.TTTGG455.995389E-934.0000043
.ACAATG504.474714E-1034.0000044
TC.ACAT351.0925341E-634.0000042
T.GAGTG301.4848949E-534.0000043
Produced by FastQC (version 0.11.5)