FastQCFastQC Report
Tue 7 May 2024
EGAF00000127522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12590
Total Bases4.2 Mbp
Sequences flagged as poor quality0
Sequence length51-663
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGTCTCTAACCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA557244.25734710087371No Hit
CGTGTCTCTAAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT418733.25655281969817No Hit
CGTGTCTCTAAGGCCTGCTGAAAATGACTGAATATAAACCTGTGGTAGTT7095.631453534551231No Hit
CGTGTCTCTAAGGCCTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT4933.915806195393169No Hit
CGTGTCTCTAAGGCCTGCTGAAATGACTGAATATAAACTTGTGGTAGTTG2011.5965051628276412No Hit
CGTGTCTCTAACCCTGACATACTACCCAAGGAAAGTAAAGTTCCCATATT1501.1914217633042097No Hit
CGTGTCTCTAAGGCCTGCTGAAAAATGACTGAATATAAACCTGTGGTAGT850.6751389992057188No Hit
CGTGTCTCTAAGGCCTGCTGAAAATAGACTGAATATAAACTTGTGGTAGT640.5083399523431295No Hit
CGTGTCTCTAAGGCCTGCTGAAAATGACTGAATATAAACTGTGGTAGTTG620.4924543288324067No Hit
CGTGTCTCTAAGGCCTGCTGAAATGACTGAATATAAACCTGTGGTAGTTG500.3971405877680699No Hit
CGTGTCTCTAACCCTGACATACTCCCAAAGGAAAGTAAAGTTCCCATATT340.27005559968228754No Hit
CGTGTCTCTAAGGCCTGCTGAAAATGACTGAATATAGACTTGTGGTAGTT340.27005559968228754No Hit
CGTGTCTCTAAGGCCTGCTGAAAAATAGACTGAATATAAACTTGTGGTAG310.24622716441620335No Hit
CGTGTCTCTAAGGCCTGCTGAAAATAGACTGAATATAAACTTAGTGGTAG270.21445591739475775No Hit
CGTGTCTCTAACCCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATT230.18268467037331215No Hit
CGTGTCTCTAAGGCCTGCTGAAAAATAGACTGAATATAAACTTAGTGGTA200.15885623510722796No Hit
CGTGTCTCTAACCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTAA180.14297061159650515No Hit
CGTGTCTCTAACCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATTATT160.12708498808578236No Hit
CGTGTCTCTAAGGCCTGCTGAAAATGACTGGATATAAACTTGTGGTAGTT150.11914217633042098No Hit
CGTGTCTCTACCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTAA130.10325655281969816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)