FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000127538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12691
Sequences flagged as poor quality0
Sequence length50-287
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGAGATACTTGTTGGATCATATTCGTCCACAAAATGATTCTGAATTAG671452.90363249546923No Hit
CGAGAGATACAGGCCTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT362728.579308171144906No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT6214.893231423843669No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCACAAATGATTCTGAATTAGC5194.089512252777559No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCACAATGATTCTGAATTAGCT2281.7965487353242455No Hit
CGAGAGATACAGGCCTGCTGAAATGACTGAATATAAACTTGTGGTAGTTG1271.00070916397447No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCAACAAAATGATTCTGAATTA440.3467023875187141No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCACAATAGATTCTGAATTAGC430.3388227878023796No Hit
CGAGAGATACAGGCCTGCTGAAAAAATGACTGAATATAAACTTGTGGTAG410.32306358836971083No Hit
CGAGAGATACAGGCCTGCTAGAAAAATGACTGAATATAAACTTGTGGTAG290.22850839177369792No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCACAAAGTGATTCTGAATTAG280.2206287920573635No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCACAAAAATGATTCTGAATTA250.19698999290836022No Hit
CGAGAGATACTTGTTGGATCATATTCGTCCACAAAATGATTCCGAATTAG170.13395319517768497No Hit
CGAGAGATACTTGTTGGATCATATTCGTCTACAAAATGATTCTGAATTAG160.12607359546135058No Hit
CGAGAGATACAGGCCTGCTGAAAAATGACTGAATATAAACTTAGTGGTAG150.11819399574501616No Hit
CGAGAGATACTTGTTGGCTCATATTCGTCCACAAAATGATTCTGAATTAG140.11031439602868175No Hit
CGAGAGATACTTGTTGGATCAATATTCGTCCACAAAATGATTCTGAATTA130.10243479631234732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)