FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000127539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11207
Sequences flagged as poor quality0
Sequence length48-399
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAAAACAAGAT534447.68448291246543No Hit
CGAGAGATACAGGCCTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT366532.70277505130722No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT7826.977781743553137No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAAACAAGATT3383.015972160256982No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAAAAACAAGA910.8119925046845722No Hit
CGAGAGATACAGGCCTGCTGAAATGACTGAATATAAACTTGTGGTAGTTG680.6067636298741858No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAAAACAGGAT470.41938074417774607No Hit
CGAGAGATACAGGCCTGCTGAAAAATGACTGAATATAAACTTGTAGGTAG470.41938074417774607No Hit
CGAGAGATACAGGCCTGCTGAAAAAATGACTGAATATAAACTTGTGGTAG350.3123048094940662No Hit
CGAGAGATACAGGCCTGCTAGAAAAATGACTGAATATAAACTTGTGGTAG290.2587668421522263No Hit
CGAGAGATACGAATGGTCCTGCACTAGTAATATGCATATTAAAACAAGAT210.18738288569643974No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATACTAAAACAAGAT190.1695368965824931No Hit
CGAGAGATACGAATGGTTCTGCACCAGTAATATGCATATTAAAACAAGAT180.16061390202551976No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAACAAGATTT160.14276791291157312No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAAAACGAGAT160.14276791291157312No Hit
CGAGAGATACGATGGTCCTGCACCAGTAATATGCATATTAAAACAAGATT150.1338449183545998No Hit
CGAGAGATACGCATGGTCCTGCACCAGTAATATGCATATTAAAACAAGAT150.1338449183545998No Hit
CGAGAGATACAGGTCTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT150.1338449183545998No Hit
CGAGAGATACGAATGGTCCTGCACCAGTAATATGCATATTAAAAACAAAG150.1338449183545998No Hit
CGAGAGATACGAATGGTCTTGCACCAGTAATATGCATATTAAAACAAGAT150.1338449183545998No Hit
CGAGAGATACAGGCCTGTTGAAAATGACTGAATATAAACTTGTGGTAGTT150.1338449183545998No Hit
CGAGAGATACGAATGGTCTGCACCAGTAATATGCATATTAAAACAAGATT130.11599892924065316No Hit
CGAGAGATACGAATGGTCCTGTACCAGTAATATGCATATTAAAACAAGAT130.11599892924065316No Hit
CGAGAGATACAGGCTTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT130.11599892924065316No Hit
CGAGAGATACGAATGGTCCTGCACAGTAATATGCATATTAAAACAAGATT120.10707593468367983No Hit
CGAGAGATACGAATGGTCCTGCATCAGTAATATGCATATTAAAACAAGAT120.10707593468367983No Hit
CGAGAGATACGAATGGGTCCTGCACCAGTAATATGCATATTAAAACAAGA120.10707593468367983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)