FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000127540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5735
Sequences flagged as poor quality0
Sequence length55-375
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGAGATACACCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA271347.30601569311247No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT246642.99912816041848No Hit
CGAGAGATACAGGCCTGCTGAAATGACTGAATATAAACTTGTGGTAGTTG280.4882301656495205No Hit
CGAGAGATACAGGCCTGCTAGAAAATGACTGAATATAAACTTGTGGTAGT270.4707933740191805No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTGGTT190.33129904097646035No Hit
CGAGAGATACACCCTGACATACTCCCAAGGGAAGTAAAGTTCCCATATTA130.2266782911944202No Hit
CGAGAGATACAGGCCTGCTGACAATGACTGAATATAAACTTGTGGTAGTT110.1918047079337402No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGCGGTAGTT90.15693112467306014No Hit
CGAGAGATACAGGCCTGCTGAACATGACTGAATATAAACTTGTGGTAGTT90.15693112467306014No Hit
CGAGAGATACAGGCCTGCTGAAAATGCCTGAATATAAACTTGTGGTAGTT90.15693112467306014No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAACATAAACTTGTGGTAGTT80.13949433304272016No Hit
CGAGAGATACAGGCCTGCTGAAAATGATTGAATATAAACTTGTGGTAGTT80.13949433304272016No Hit
CGAGAGATACAGGCTTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT80.13949433304272016No Hit
CGAGAGATACACCCTGACATACTCCCCAGGAAAGTAAAGTTCCCATATTA80.13949433304272016No Hit
CGAGAGATACACCTTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA80.13949433304272016No Hit
CGAGAGATACACCCTGACATACTCCCAAGGAAAGTAAGTTCCCATATTAA80.13949433304272016No Hit
CGAGAGATACACCCTGATATACTCCCAAGGAAAGTAAAGTTCCCATATTA80.13949433304272016No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAATT80.13949433304272016No Hit
CGAGAGATACAGGTCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT70.12205754141238012No Hit
CGAGAGATACACCCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATT70.12205754141238012No Hit
CGAGAGATACACCCTGACATACTCCTAAGGAAAGTAAAGTTCCCATATTA70.12205754141238012No Hit
CGAGAGATACACCCTGACATACTCCCAAAGAAAGTAAAGTTCCCATATTA70.12205754141238012No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGATATAAACTTGTGGTAGTTG70.12205754141238012No Hit
CGAGAGATACCGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT60.1046207497820401No Hit
CGAGAGATACAGGCCTGCTGCAAATGACTGAATATAAACTTGTGGTAGTT60.1046207497820401No Hit
CGAGAGATACCCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTAA60.1046207497820401No Hit
CGAGAGATACAGGCCTGCTAAAATGACTGAATATAAACTTGTGGTAGTTG60.1046207497820401No Hit
CGAGAGATACACCCTGACATACTTCCAAGGAAAGTAAAGTTCCCATATTA60.1046207497820401No Hit
CGAGAGATACAGGCCTGTTGAAAATGACTGAATATAAACTTGTGGTAGTT60.1046207497820401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)