FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000127552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13943
Sequences flagged as poor quality0
Sequence length53-200
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGTCTCTAAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT558940.084630280427454No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCACAAAATGATTCTGAATTAG545939.152262784192786No Hit
CGTGTCTCTAAGGCCTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT6094.367783116976261No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCACAAAAATGATTCTGAATTA3282.352434913576705No Hit
CGTGTCTCTAAGGCCTGCTGAAATGACTGAATATAAACTTGTGGTAGTTG3102.22333787563652No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCACAAATGATTCTGAATTAGC2471.7714982428458723No Hit
CGTGTCTCTAAGGCCTGCTGAATGACTGAATATAAACTTGTGGTAGTTGG500.3586028831671807No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCACAAAATGATTCTAGAATTA490.35143082550383703No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCAACAAAATGATTCTGAATTA470.33708671017714986No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCACAAATAGATTCTGAATTAG370.2653661335437137No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCCCCAAAATGATTCTGAATTAG330.23667790289033924No Hit
CGTGTCTCTATTGTTGGATCATATTTGTCCACAAAATGATTCTGAATTAG260.18647349924693393No Hit
CGTGTCTCTAAGGCCTGCTGAAAATAGACTGAATATAAACTTGTGGTAGT250.17930144158359035No Hit
CGTGTCTCTATTGTTGGATCATATTCGTTCACAAAATGATTCTGAATTAG240.1721293839202467No Hit
CGTGTCTCTATTGTTGGATTATATTCGTCCACAAAATGATTCTGAATTAG240.1721293839202467No Hit
CGTGTCTCTATTGTTGATCATATTCGTCCACAAAATGATTCTGAATTAGC240.1721293839202467No Hit
CGTGTCTCTAAGGCCTGCTGAAAAATAGACTGAATATAAACTTGTGGTAG210.15061321093021587No Hit
CGTGTCTCTATTGTTGGCTCATATTCGTCCACAAAATGATTCTGAATTAG190.13626909560352865No Hit
CGTGTCTCTATTGTTGGATCATTTCGTCCACAAAATGATTCTGAATTAGC180.12909703794018504No Hit
CGTGTCTCTAAGGCCTGCTGAAATAGACTGAATATAAACTTGTGGTAGTT170.12192498027684141No Hit
CGTGTCTCTATTGTGGATCATATTCGTCCACAAAATGATTCTGAATTAGC170.12192498027684141No Hit
CGTGTCTCTATTGTTGGATCATATCGTCCACAAAATGATTCTGAATTAGC160.11475292261349782No Hit
CGTGTCTCTATTGTTGGATCTATTCGTCCACAAAATGATTCTGAATTAGC160.11475292261349782No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCACAAAATGATTCTGAATTAGC160.11475292261349782No Hit
CGTGTCTCTATTGTTGGATCCTATTCGTCCACAAAATGATTCTGAATTAG150.10758086495015419No Hit
CGTGTCTCTATTGTTGGATCATATTCGTCTACAAAATGATTCTGAATTAG140.10040880728681059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)