FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000127554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19443
Sequences flagged as poor quality0
Sequence length54-581
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGAGATACACCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA908046.70061204546624No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT748338.486859023813196No Hit
CGAGAGATACAGGCCTGCTGAAAAATGACTGAATATAAACTTGTGGTAGT5532.844211284266831No Hit
CGAGAGATACAGGCCTGCTGAAATGACTGAATATAAACTTGTGGTAGTTG2141.1006531913799311No Hit
CGAGAGATACACCCTGACATACTCCCAAGGAAAGTAAAAGTTCCCATATT2021.038934320835262No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAAAACTTGTGGTAGT1620.833204752353032No Hit
CGAGAGATACAGGCCTGCTGAAAAATGACTGAATATAAAACTTGTGGTAG1140.5863292701743559No Hit
CGAGAGATACACCCTGACATACTCCCAAGGAAAGTAAAGTTTCCATATTA900.46289152908501774No Hit
CGAGAGATACAGGCCTGCTAGAAAATGACTGAATAATAAACTTGTGGTAG600.3085943527233452No Hit
CGAGAGATACAGGCTTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT410.21087280769428585No Hit
CGAGAGATACACCCTGACATACTCCCAAGGAAAGTAAAGTTACCCATATT330.16972689399783983No Hit
CGAGAGATACACCCTGACATACTCCCCAGGAAAGTAAAGTTCCCATATTA310.15944041557372834No Hit
CGAGAGATACACCCTGATATACTCCCAAGGAAAGTAAAGTTCCCATATTA290.14915393714961683No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATATAGACTTGTGGTAGTT270.13886745872550532No Hit
CGAGAGATACAGGTCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT260.13372421951344957No Hit
CGAGAGATACATCCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA250.12858098030139384No Hit
CGAGAGATACACTCTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA250.12858098030139384No Hit
CGAGAGATACACCCTGACATACTCCTAAGGAAAGTAAAGTTCCCATATTA250.12858098030139384No Hit
CGAGAGATACACCCTGACATACTCCCAAGGAAGTAAAGTTCCCATATTAA230.1182945018772823No Hit
CGAGAGATACACCCTGACATACTCTCAAGGAAAGTAAAGTTCCCATATTA230.1182945018772823No Hit
CGAGAGATACACCTTGACATACTCCCAAGGAAAGTAAAGTTCCCATATTA220.11315126266522656No Hit
CGAGAGATACAGGCCTGCTGACAATGACTGAATATAAACTTGTGGTAGTT210.1080080234531708No Hit
CGAGAGATACAGGCCTGCTGAAAATGCCTGAATATAAACTTGTGGTAGTT200.10286478424111506No Hit
CGAGAGATACACCCTGACATATTCCCAAGGAAAGTAAAGTTCCCATATTA200.10286478424111506No Hit
CGAGAGATACAGGCCTGCTGAAAATGACTGAATAATAAACTTGTGGTAGT200.10286478424111506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)