FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000127571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93952
Sequences flagged as poor quality0
Sequence length25-566
%GC43

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTGTGTCATGAGCTGAGTTGAAGTTGGTGATCACCCGGGAAGGAATC2060.21926089918256128No Hit
GTGCTCCTGGTGGCTTCGGCCCCAGCCACTCTGGAGCCTCCCGGCTGCAG1800.19158719346049047No Hit
AAATCTGCTCGTCTTGATCTACTTTATCGCCTGCTCACTGCTACTAATCT1440.15326975476839239No Hit
ACTGAGATTTCGGTCTGTGTCATGAGCTGAGTTGAAGTTGGTGATCACCC1340.14262602179836512No Hit
CTAGTTAGTGTTTGTTCCGGTTGGGAAGGAGGAGCTCTTACGTCACTGGC1080.11495231607629429No Hit
GTCTGTGTCATGAGCTGAGTTGAAGTTGGTGATCACCCGGGAAGGAATCC1020.10856607629427793No Hit
ATATGGCCAGTGCTGGGTCTTTGCTGGGACCCTCAACACAGGTACCTTGG970.10324420980926431No Hit
AGATGGCTTCTGTGGCTGGACCCAAGGCACACAGGGATA940.10005108991825613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)