FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000127575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000127575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124749
Sequences flagged as poor quality0
Sequence length26-643
%GC43

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTGGCATTGGCATATTTGCCTTTAGTGGTCCTGAAATGATGGTGCCT2160.1731476805425294No Hit
CCCGGGAAGGAATCCCCAAAGACCGCAGCGCTGCAAGTCAGGGTGGGCGT2100.16833802274968138No Hit
GTCAGGGTGGGCGTGAGGACTCAGGTGGTGGAGATGGTACCTTGGCATAG1660.1330671989354624No Hit
GGGAAGGAATCCCCAAAGACCGCAGCGCTGCAAGTCAGGGTGGGCGTGAG1620.12986076040689704No Hit
GACTTGGCATTGGCATATTTTGCCTTTAGTGGTCCTGAAAATGATGGTGC1610.12905915077475572No Hit
CATTTCAGTGGTGTGGTTCAAAGATAAGGGAGAAATCGTTAGAGAAAGTG1370.10982051960336356No Hit
ACCTCATTGCTTTGCAGTGGCAGGCCCTGTAGGCACCACTGCACGCCTGT1250.10020120401766748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)