FastQCFastQC Report
Thu 5 Jan 2023
EGAF00000143247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000143247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37088331
Sequences flagged as poor quality0
Sequence length42
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATC11632673.1364770768466235TruSeq Adapter, Index 4 (100% over 42bp)
ATCTAACAGCAATACCTGATCACTACTTCGCACTAGTTTCTC479410.12926168071569463No Hit
ATCCCCGAGTCCTTCAATGCTATCATTCCCTTTGATATTGGA397000.10704175391445898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)