FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000143279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000143279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26548350
Sequences flagged as poor quality0
Sequence length42
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATC736560.27744097090779657TruSeq Adapter, Index 4 (100% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATC652870.24591735456252461TruSeq Adapter, Index 2 (100% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATC496660.18707753965877352TruSeq Adapter, Index 5 (100% over 42bp)
ATCTAACAGCAATACCTGATCACTACTTCGCACTAGTTTCTC399570.15050652865432315No Hit
ATCCCCGAGTCCTTCAATGCTATCATTCCCTTTGATATTGGA328940.12390223874553408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)