FastQCFastQC Report
Sun 12 May 2024
EGAF00000143372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000143372
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences39413077
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4271421.0837570484537404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)