FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000146454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000146454
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences306183716
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTCCTGCTGAACCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTG92524963.0218772313809135Illumina Single End PCR Primer 1 (100% over 32bp)
GGCATTCCTGCTGAACCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGGG3401080.11107971529093336Illumina Single End PCR Primer 1 (96% over 32bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT3252860.10623883080705702Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)