FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000161857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000161857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20645123
Sequences flagged as poor quality0
Sequence length42
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATC12432786.022138981685893TruSeq Adapter, Index 4 (100% over 42bp)
ATCTAACAGCAATACCTGATCACTACTTCGCACTAGTTTCTC688020.33326030559372305No Hit
ATCCCCGAGTCCTTCAATGCTATCATTCCCTTTGATATTGGA572100.2771114514551451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)