FastQCFastQC Report
Sat 1 Apr 2023
EGAF00000161876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000161876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32109231
Sequences flagged as poor quality0
Sequence length42
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATC1773470.5523240341694885TruSeq Adapter, Index 6 (100% over 42bp)
ATCTAACAGCAATACCTGATCACTACTTCGCACTAGTTTCTC822450.25614129469497415No Hit
ATCCCCGAGTCCTTCAATGCTATCATTCCCTTTGATATTGGA670070.2086845368548378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)