FastQCFastQC Report
Tue 4 Apr 2023
EGAF00000223553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223553
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences54454580
Sequences flagged as poor quality0
Sequence length90
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC2187680.40174398553803925TruSeq Adapter, Index 3 (100% over 50bp)
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG715400.1313755426999896No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT706840.1298035904417957No Hit
GTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGA570660.10479559295104286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)