FastQCFastQC Report
Sat 11 Mar 2023
EGAF00000223586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223586
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences79612299
Sequences flagged as poor quality0
Sequence length90
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG4405160.5533265657860226Illumina Single End PCR Primer 1 (100% over 50bp)
GTTCCTCCTAACTCCTGCCAGAAACAGCTCTCCTCAACATGAGAGCTGCA1738340.2183506847352819No Hit
GTCAGTGGGAAAGGTGTCAATGGGACTTCGGTCTCCATGCCGAAACACCA993810.12483121483528568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)