FastQCFastQC Report
Mon 3 Apr 2023
EGAF00000223603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223603
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences51655026
Sequences flagged as poor quality0
Sequence length90
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT693090.1341766820521976No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC626350.12125635170525323TruSeq Adapter, Index 1 (100% over 50bp)
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT606640.11744065330641786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)