FastQCFastQC Report
Fri 6 Jan 2023
EGAF00000223611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223611
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences53681113
Sequences flagged as poor quality0
Sequence length90
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC4852130.903880290261493TruSeq Adapter, Index 2 (100% over 50bp)
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT774270.1442350869289912No Hit
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT624510.11633700664887481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)