FastQCFastQC Report
Tue 4 Apr 2023
EGAF00000223612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223612
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences53681113
Sequences flagged as poor quality0
Sequence length90
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG3516430.6550590707759729Illumina Single End PCR Primer 1 (100% over 50bp)
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT747620.13927058479581078No Hit
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT639110.11905677141977292No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGGGTAGATCTCGGTGGTCGCCG579890.10802495842439033Illumina Single End PCR Primer 1 (98% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)