FastQCFastQC Report
Mon 3 Apr 2023
EGAF00000223620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223620
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences52386543
Sequences flagged as poor quality0
Sequence length90
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT744640.1421433744921859No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT743640.1419524857748296No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG734480.14020394512384604No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCC727280.13882954635888073No Hit
GGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCA724270.13825497131963832No Hit
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATGTCATATAAGTAAT663460.1266470284172025No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC623720.11906111078946362No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG607060.11588090475830788Illumina Single End PCR Primer 1 (100% over 50bp)
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGTATGGCT574370.10964075258793084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)