FastQCFastQC Report
Sat 16 Sep 2023
EGAF00000223626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223626
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences51266413
Sequences flagged as poor quality0
Sequence length90
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT2666650.5201553695594033No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG2186540.42650536131716493No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT2141020.41762625366436307No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT1861230.36305056099789934No Hit
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT1673970.3265237222662721No Hit
GTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGA1281890.2500448002866906No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT1162710.2267976111377248No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC975880.19035464798366133No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT952900.18587218107106498No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGT937000.18277073529603094No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT931480.18169400695149082No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT838780.16361199290459427No Hit
GGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCA818960.1597459139573506No Hit
AAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACC801720.1563830884754898No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA729570.1423095467982127No Hit
GGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAAT710560.1386014660319613No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC703150.13715607526510581No Hit
GTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGG673430.13135890743906736No Hit
GGCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGA672120.1311033795167218No Hit
GGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTT665510.12981403633603156No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC659170.12857735921567207No Hit
GGGGAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAA628360.12256757655348346No Hit
GTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGG621420.12121386374350006No Hit
CGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGATTAAG605140.11803829536503753No Hit
CAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTC595420.11614231719312992No Hit
GCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGG593880.11584192558976186No Hit
GGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTT572300.11163254195295466No Hit
CTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTT562360.10969365069485161No Hit
CGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCA559610.10915723711740863No Hit
GTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCATTGGT555240.10830482717798104No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA542030.10572809141142758No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT534520.10426319469630145No Hit
GTTGGGTTCTGCTCCGAGGTCGCCCCAACCGAAATTTTTAATGCAGGTTT525370.10247840042953658No Hit
CTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTC523220.10205902254171752No Hit
GTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCAT519860.10140362267982354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)