FastQCFastQC Report
Mon 3 Apr 2023
EGAF00000223634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000223634
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences53026947
Sequences flagged as poor quality0
Sequence length90
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG3250610.6130109659151224Illumina Single End PCR Primer 1 (100% over 50bp)
CGCAAAATTAACCCCCTAATAAAATTAATTAACCGCTCATTCATCGACCT1068540.2015088668031369No Hit
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT872190.1644805234591386No Hit
GTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGA693730.13082593648093677No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT598100.11279170946801821No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT584550.11023640489806061No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC579350.10925577140995879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)