FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000225414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000225414
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1027044
Sequences flagged as poor quality0
Sequence length5-51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGTCTTCTGCTT26990.26279302542052724Illumina Single End Adapter 1 (100% over 19bp)
AGAGCACACGTCT14060.13689773758475782Illumina Multiplexing Adapter 1 (100% over 13bp)
CACACGTCT10300.10028781629608859Illumina Multiplexing Adapter 1 (100% over 9bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)