FastQCFastQC Report
Sat 11 May 2024
EGAF00000239325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000239325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44871607
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length42
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATC547900.1221039398031811TruSeq Adapter, Index 5 (100% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)