FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000278927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000278927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269071
Sequences flagged as poor quality0
Sequence length40-151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCACAAAATGGATCCAGACACCATTTTCCTATCAGAGCAAGCA9802736.431648152346405No Hit
TCCACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT6377423.70155089177206No Hit
GTTCAAACTGATGGGACCCACTCCATCGAGATTTCACTGTAGCTAGACCA5914021.97932887602157No Hit
TCCACAAAATGGATCCAGACACCATTTTCCTATCAGAGCAAGCAAGATCG37371.3888527563356883No Hit
TCCACAAAATGGATCCAGACGCCATTTTCCTATCAGAGCAAGCA10750.3995228025316738No Hit
TCCACAAAAGGGATCCAGACACCATTTTCCTATCAGAGCAAGCA8930.33188266294026486No Hit
TCCACAAAATGGATCCAGACTCCATTTTCCTATCAGAGCAAGCA7550.280595084568757No Hit
TCCACAAAATGGATCCAGACCCCATTTTCCTATCAGAGCAAGCA7390.2746486986706111No Hit
GGTTCAAACTGATGGGACCCACTCCATCGAGATTTCACTGTAGCTAGACC6980.2594110848066124No Hit
CGTTCAAACTGATGGGACCCACTCCATCGAGATTTCACTGTAGCTAGACC5010.18619620843569168No Hit
TCACAAAATGGATCCAGACACCATTTTCCTATCAGAGCAAGCA4100.15237613863998722No Hit
TTCACAAAATGGATCCAGACACCATTTTCCTATCAGAGCAAGCA3740.13899677036915906No Hit
TCCACAAAATGGATCCAGTCACCATTTTCCTATCAGAGCAAGCA3570.1326787353523791No Hit
TCCACAAAATGGATCCAGACAACTGCTCAAACTGATGGGACCCACTCCAT3210.11929936708155098No Hit
CCACAAAATGGATCCAGACACCATTTTCCTATCAGAGCAAGCA3130.11632617413247805No Hit
TCCACAAAATGGATCCAGACACCAGTTTCCTATCAGAGCAAGCA2960.11000813911569808No Hit
GGTCAAACTGATGGGACCCACTCCATCGAGATTTCACTGTAGCTAGACCA2810.10443340233618635No Hit
ACTGTTCAAACTGATGGGACCCACTCCATCGAGATTTCACTGTAGCTAGA2800.10406175321755223No Hit
TCTACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT2700.10034526203121108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)