FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000278938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000278938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35804
Sequences flagged as poor quality0
Sequence length21-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTTGCTCTGATAGGAAAAT1659546.34956988046029No Hit
TCCACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT1603644.78829181097084No Hit
TCTACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT740.20668081778572228No Hit
TCCTCAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT630.17595799352027708No Hit
TCCACAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCATC620.1731650094961457No Hit
TCCACAAACTGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT620.1731650094961457No Hit
TGCTTGCTCTGATAGGAAATG580.16199307339962016No Hit
TTCACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT570.15920008937548877No Hit
TCCACAAAATGGATCCAGCCAACTGTTCAAACTGATGGGACCCACTCCAT560.1564071053513574No Hit
TCCACAAAATGGATCTAGACAACTGTTCAAACTGATGGGACCCACTCCAT510.14244218523070049No Hit
TCACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCATC480.13406323315830634No Hit
TCCACAAAATGGATTCAGACAACTGTTCAAACTGATGGGACCCACTCCAT450.12568428108591218No Hit
CCACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCATC450.12568428108591218No Hit
TCCACAAAATGGATCCATACAACTGTTCAAACTGATGGGACCCACTCCAT450.12568428108591218No Hit
TCCACTAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACTCCAT420.11730532901351805No Hit
TGCTTGCTCTGATAGGAAACT390.10892637694112389No Hit
TCCACAAAATGGATCCAGACAACTGTTCAAACTGATGGGACCCACCCCAT360.10054742486872975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)