FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000278943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000278943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180637
Sequences flagged as poor quality0
Sequence length35-151
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGCAATTTCTACACGAGATCCTCTCTCTGAAATCACTGAGCAGGAGA8077744.717859574727214No Hit
GGGAAAATGACAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTC8049544.56174537885372No Hit
GCTCAAAGCAATTTCTACACGAGATCCTCTCTCTGAAATCACTGAGCAGG19741.092799371114445No Hit
GGGAAATGACAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTCT6950.38474952529105333No Hit
GGAAAATGACAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTCT6470.3581768962062036No Hit
GGGAACATGACAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTC4630.25631515138094635No Hit
GGGAAAATGACAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTCT3880.21479541843586863No Hit
CAAAGCAATTTCTACACGAGATCCTCTCTCTGAAATCACTGAGCAGGGGA3180.17604366768712945No Hit
GGGAAAATGACAAAGAACGGCTCAAAGCAATTTCTACACGAGATCCTCTC2540.14061349557399647No Hit
GGGAAAATGATAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTC2070.11459446292841444No Hit
GGGAAAATGCAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTCT2060.11404086648914676No Hit
GGGAAAAGGACAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTC2050.11348727004987903No Hit
GGGAAAATGACAACGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTC1920.10629051633939891No Hit
GGGAAAATGGCAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTCTC1880.1040761305823281No Hit
CAAAGCAATTTCTACACGAGATCCTCTCTCTGAAATCACTGGGCAGGAGA1810.10020095550745417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)