FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000278959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000278959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences319487
Sequences flagged as poor quality0
Sequence length42-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT14028443.90914184301708No Hit
GCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG12843740.201009743745445No Hit
GCAAGAGGCTTTGGAGTATTTCATGAAACAAATNAATGATGCACATCATG44551.394422934266496No Hit
AGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCAT19860.6216215370265457No Hit
CTGAGCAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC8520.266677517395074No Hit
AGCAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG7400.23162131792529897No Hit
CTGAGCAAGAGGCTTGGAGTATTTCATGAAACAAATGAATGATGCACATC6330.19813012736042468No Hit
GCAAGAGGCGTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG5560.17402899022495438No Hit
CTGGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC5470.17121197419613318No Hit
AGCAAGAGGCTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG5440.17027296885319276No Hit
GCAAGAGGCTGTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG5240.1640129332335901No Hit
GTGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT4980.1558748869281066No Hit
ACAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG4600.14398081925086154No Hit
GCAAGAGGTTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG4060.1270787230779343No Hit
CTGAGCAAGAGGTTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT3940.12332270170617272No Hit
CTGAGAAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT3810.11925367855343096No Hit
CTGAGAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3770.11800167142951043No Hit
GCAATAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3760.11768866964853031No Hit
GCAAGATGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3760.11768866964853031No Hit
CTGAGCAAGAGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3750.11737566786755016No Hit
CAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGG3650.11424565005774884No Hit
CTAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3500.10955062334304683No Hit
GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCA3470.10861161800010642No Hit
TGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3460.10829861621912627No Hit
AGAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3450.10798561443814615No Hit
TTGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT3410.10673360731422563No Hit
AGCAAGAGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3270.10235158238050375No Hit
CGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3240.10141257703756333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)