FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000278968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000278968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences260268
Sequences flagged as poor quality0
Sequence length35-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT11604844.58788633254952No Hit
GCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG11364743.665375689673716No Hit
AGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCAT20910.8034026465028355No Hit
CTGAGCAAGAGGCTTTGGAGCATTTCATGAAACAAATGAATGATGCACAT7730.29700155224614627No Hit
AGCAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG6860.26357446939308715No Hit
CTGAGCAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC6700.25742695990286935No Hit
CTGGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC4820.18519372339281048No Hit
AGCAAGAGGCTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG4380.1682880722947116No Hit
CTGAGCAAGAGGCTTGGAGTATTTCATGAAACAAATGAATGATGCACATC4370.167903852951573No Hit
GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCA3990.1533035179123058No Hit
TGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3710.14254537630442465No Hit
CTAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3680.14139271827500885No Hit
ACAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3560.1367820861573455No Hit
CGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3430.13178723469654358No Hit
GCAAGAGGCTTTGGGGTATTTCATGAAACAAATGAATGATGCACATCATG3190.1225659704612169No Hit
GCAAGAGGTTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3140.12064487374552385No Hit
CTGAGCAAGAGGCTTTGGGGTATTTCATGAAACAAATGAATGATGCACAT3090.11872377702983078No Hit
CTGAGCAAGAGGTTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT3080.11833955768669217No Hit
AGAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3080.11833955768669217No Hit
CTGAGAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3070.11795533834355358No Hit
AGCAAGAGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG3060.11757111900041496No Hit
CTGAGCAAGAGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC3030.11641846097099912No Hit
CAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGG2960.11372892556902885No Hit
AGCAAGGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG2850.10950251279450413No Hit
GCAAGAGGCGTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG2800.10758141607881107No Hit
CTGAGCAAGGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC2790.10719719673567246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)