FastQCFastQC Report
Wed 8 May 2024
EGAF00000278969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000278969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129230
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT5584243.21132863886095No Hit
GCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG5060039.15499497020816No Hit
GCAAGAGGCTTTGGAGTATTTCATGAAACAAATNAATGATGCACATCATG18541.4346513967345045No Hit
AGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCAT8000.6190513038768087No Hit
CTGAGCAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC2810.21744177048672908No Hit
AGCAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG2570.1988702313704248No Hit
CTGGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC2350.18184632051381258No Hit
CTGAGCAAGAGGCTTGGAGTATTTCATGAAACAAATGAATGATGCACATC2300.17797724986458255No Hit
GCAAGAGGCTGTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG2000.15476282596920218No Hit
GCAAGAGGCGTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1920.1485723129304341No Hit
AGCAAGAGGCTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1910.1477984988005881No Hit
GTGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT1900.1470246846707421No Hit
CTGAGCAAGAGGCTTTGGGGTATTTCATGAAACAAATGAATGATGCACAT1900.1470246846707421No Hit
GCAAGAGGCTTTGGGGTATTTCATGAAACAAATGAATGATGCACATCATG1790.13851272924243596No Hit
ACAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1750.1354174727230519No Hit
CTAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC1650.1276793314245918No Hit
GAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCA1590.12303644664551576No Hit
CTGAGAAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT1520.11761974773659366No Hit
GCAAGAGGTTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1460.1129768629575176No Hit
CAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATGG1440.11142923469782558No Hit
TGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC1430.11065542056797957No Hit
GCAATAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1410.10910779230828756No Hit
CTGAGCAAGAGGTTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT1390.10756016404859553No Hit
CTGAGCAAGAGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC1380.10678634991874952No Hit
GCAAGATGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1350.10446490752921149No Hit
CTGAGAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC1330.10291727926951948No Hit
CGAGCAAGAGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATC1300.10059583687998142No Hit
GCAAGAGTCTTTGGAGTATTTCATGAAACAAATGAATGATGCACATCATG1300.10059583687998142No Hit
CTGAGCAAGTGGCTTTGGAGTATTTCATGAAACAAATGAATGATGCACAT1300.10059583687998142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)