FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000284321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000284321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43399494
Sequences flagged as poor quality0
Sequence length42
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATC7087721.633134248062892TruSeq Adapter, Index 11 (100% over 42bp)
GATCGGGAGAGCACACGTCTGAACTCCAGTCACGGCTACATC966270.2226454529631152TruSeq Adapter, Index 11 (97% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)