FastQCFastQC Report
Tue 5 Sep 2023
EGAF00000286311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000286311
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences77916148
Sequences flagged as poor quality0
Sequence length75
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCT2528080.3244616250793096Illumina Paired End PCR Primer 2 (100% over 56bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTA1223090.1569751625811892Illumina Paired End PCR Primer 2 (100% over 45bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)