FastQCFastQC Report
Sat 11 Mar 2023
EGAF00000317322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000317322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80637203
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2294330.2845249977234453No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT943790.11704150998392143No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG892860.11072556670895443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)