FastQCFastQC Report
Wed 22 Feb 2023
EGAF00000321688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000321688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79717545
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4888010.6131661480543587No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT998270.12522588346141367No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA817980.10260978307849294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)